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  "Title": "Bayesian Calibration of Complex Computer Codes",
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  "Authors@R": "person(given=c(\"Robin\", \"K. S.\"), family=\"Hankin\", role = c(\"aut\",\"cre\"), email=\"hankin.robin@gmail.com\", comment = c(ORCID = \"0000-0001-5982-0415\"))",
  "Maintainer": "Robin K. S. Hankin <hankin.robin@gmail.com>",
  "Description": "Performs Bayesian calibration of computer models as per\nKennedy and O'Hagan 2001.  The package includes routines to\nfind the hyperparameters and parameters; see the help page for\nstage1() for a worked example using the toy dataset.  A\ntutorial is provided in the calex.Rnw vignette; and a suite of\nespecially simple one dimensional examples appears in\ninst/doc/one.dim/.",
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  "URL": "https://github.com/RobinHankin/calibrator",
  "BugReports": "https://github.com/RobinHankin/calibrator/issues",
  "Config/pak/sysreqs": "make",
  "Repository": "https://robinhankin.r-universe.dev",
  "Date/Publication": "2021-04-25 06:04:53 UTC",
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    "beta2hat.fun",
    "betahat.fun.koh",
    "betahat.fun.koh.vector",
    "blockdiag",
    "C1",
    "computer.model",
    "Cov.eqn9.supp",
    "cov.p5.supp",
    "create.new.toy.datasets",
    "D1.fun",
    "D2.fun",
    "dists.2frames",
    "E.theta.toy",
    "Edash.theta.toy",
    "EK.eqn10.supp",
    "etahat",
    "extractor.toy",
    "Ez.eqn7.supp",
    "Ez.eqn9.supp",
    "Ez.eqn9.supp.vector",
    "h.fun",
    "H.fun",
    "h1.toy",
    "H1.toy",
    "h2.toy",
    "H2.toy",
    "hbar.fun.toy",
    "hh.fun",
    "ht.fun",
    "is.positive.definite",
    "MH",
    "model.inadequacy",
    "p.eqn4.supp",
    "p.eqn8.supp",
    "p.eqn8.supp.vector",
    "p.page4",
    "phi.change",
    "phi.fun.toy",
    "phi.true.toy",
    "prob.psi1",
    "prob.psi2",
    "prob.theta",
    "sample.theta",
    "stage1",
    "stage2",
    "stage3",
    "symmetrize",
    "t.fun",
    "tee",
    "tt.fun",
    "V.fun",
    "V1",
    "V2",
    "Vd",
    "W",
    "W1",
    "W2"
  ],
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      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "D1.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "x",
        "y",
        "A",
        "B",
        "C"
      ],
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      "table": true,
      "tojson": true
    },
    {
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      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "x",
        "y"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "phi.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
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      "name": "t.vec.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "A",
        "B",
        "C"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "theta.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "V.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "obs.1",
        "obs.2",
        "obs.3",
        "obs.4",
        "obs.5"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "X.dist.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "x.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "x.toy2",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "x.vec",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "x",
        "y"
      ],
      "rows": 3,
      "table": true,
      "tojson": true
    },
    {
      "name": "y.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "z.toy",
      "title": "Toy datasets",
      "object": "toys",
      "file": "toys.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calibrator-package",
      "title": "Bayesian Calibration of Complex Computer Codes",
      "topics": [
        "calibrator-package",
        "calibrator"
      ]
    },
    {
      "page": "beta1hat.fun",
      "title": "beta1 estimator",
      "topics": [
        "beta1hat.fun"
      ]
    },
    {
      "page": "beta2hat.fun",
      "title": "estimator for beta2",
      "topics": [
        "beta2hat.fun"
      ]
    },
    {
      "page": "betahat.fun.koh",
      "title": "Expectation of beta, given theta, phi and d",
      "topics": [
        "betahat.fun.koh",
        "betahat.fun.koh.vector"
      ]
    },
    {
      "page": "blockdiag",
      "title": "Assembles matrices blockwise into a block diagonal matrix",
      "topics": [
        "blockdiag"
      ]
    },
    {
      "page": "C1",
      "title": "Matrix of distances from D1 to D2",
      "topics": [
        "C1"
      ]
    },
    {
      "page": "cov.p5.supp",
      "title": "Covariance function for posterior distribution of z",
      "topics": [
        "Cov.eqn9.supp",
        "cov.p5.supp"
      ]
    },
    {
      "page": "create.new.toy.datasets",
      "title": "Create new toy datasets",
      "topics": [
        "create.new.toy.datasets"
      ]
    },
    {
      "page": "D1.fun",
      "title": "Function to join x.star to t.vec to give matrix D1",
      "topics": [
        "D1.fun"
      ]
    },
    {
      "page": "D2.fun",
      "title": "Augments observation points with parameters",
      "topics": [
        "D2.fun"
      ]
    },
    {
      "page": "dists.2frames",
      "title": "Distance between two points",
      "topics": [
        "dists.2frames"
      ]
    },
    {
      "page": "E.theta.toy",
      "title": "Expectation and variance with respect to theta",
      "topics": [
        "E.theta.toy",
        "Edash.theta.toy"
      ]
    },
    {
      "page": "EK.eqn10.supp",
      "title": "Posterior mean of K",
      "topics": [
        "EK.eqn10.supp"
      ]
    },
    {
      "page": "etahat",
      "title": "Expectation of computer output",
      "topics": [
        "etahat"
      ]
    },
    {
      "page": "extractor.toy",
      "title": "Extracts lat/long matrix and theta matrix from D2.",
      "topics": [
        "extractor.toy"
      ]
    },
    {
      "page": "Ez.eqn7.supp",
      "title": "Expectation of z given y, beta2, phi",
      "topics": [
        "Ez.eqn7.supp"
      ]
    },
    {
      "page": "Ez.eqn9.supp",
      "title": "Expectation as per equation 10 of KOH2001",
      "topics": [
        "Ez.eqn9.supp",
        "Ez.eqn9.supp.vector"
      ]
    },
    {
      "page": "H.fun",
      "title": "H function",
      "topics": [
        "H.fun"
      ]
    },
    {
      "page": "h1",
      "title": "Basis functions",
      "topics": [
        "h1.toy",
        "h2.toy"
      ]
    },
    {
      "page": "H1.toy",
      "title": "Basis functions for D1 and D2",
      "topics": [
        "H1.toy",
        "H2.toy"
      ]
    },
    {
      "page": "hbar.fun.toy",
      "title": "Toy example of hbar (section 4.2)",
      "topics": [
        "hbar.fun.toy"
      ]
    },
    {
      "page": "is.positive.definite",
      "title": "Is a matrix positive definite?",
      "topics": [
        "is.positive.definite"
      ]
    },
    {
      "page": "MH",
      "title": "Very basic implementation of the Metropolis-Hastings algorithm",
      "topics": [
        "MH"
      ]
    },
    {
      "page": "p.eqn4.supp",
      "title": "Apostiori probability of psi1",
      "topics": [
        "p.eqn4.supp",
        "p.equationn4.supp"
      ]
    },
    {
      "page": "p.eqn8.supp",
      "title": "A postiori probability of hyperparameters",
      "topics": [
        "p.eqn8.supp",
        "p.eqn8.supp.vector"
      ]
    },
    {
      "page": "p.page4",
      "title": "A postiori probability of hyperparameters",
      "topics": [
        "p.page4"
      ]
    },
    {
      "page": "phi.fun.toy",
      "title": "Functions to create or change hyperparameters",
      "topics": [
        "phi.change",
        "phi.fun.toy"
      ]
    },
    {
      "page": "prob.psi1",
      "title": "A priori probability of psi1, psi2, and theta",
      "topics": [
        "prob.psi1",
        "prob.psi2",
        "prob.theta",
        "sample.theta"
      ]
    },
    {
      "page": "reality",
      "title": "Reality",
      "topics": [
        "computer.model",
        "model.inadequacy",
        "phi.true",
        "phi.true.toy",
        "reality"
      ]
    },
    {
      "page": "stage1",
      "title": "Stage 1,2 and 3 optimization on toy dataset",
      "topics": [
        "stage1",
        "stage2",
        "stage3"
      ]
    },
    {
      "page": "symmetrize",
      "title": "Symmetrize an upper triangular matrix",
      "topics": [
        "symmetrize"
      ]
    },
    {
      "page": "tee",
      "title": "Auxiliary functions for equation 9 of the supplement",
      "topics": [
        "h.fun",
        "tee"
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    },
    {
      "page": "toys",
      "title": "Toy datasets",
      "topics": [
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        "D1.toy",
        "D2.toy",
        "phi.toy",
        "t.vec.toy",
        "theta.toy",
        "toys",
        "V.toy",
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        "x.toy",
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        "x.vec",
        "y.toy",
        "z.toy"
      ]
    },
    {
      "page": "tt.fun",
      "title": "Integrals needed in KOH2001",
      "topics": [
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        "ht.fun",
        "t.fun",
        "tt.fun"
      ]
    },
    {
      "page": "V.fun",
      "title": "Variance matrix for observations",
      "topics": [
        "V.fun"
      ]
    },
    {
      "page": "V1",
      "title": "Distance matrix",
      "topics": [
        "V1"
      ]
    },
    {
      "page": "V2",
      "title": "distance between observation points",
      "topics": [
        "V2"
      ]
    },
    {
      "page": "Vd",
      "title": "Variance matrix for d",
      "topics": [
        "Vd"
      ]
    },
    {
      "page": "W",
      "title": "covariance matrix for beta",
      "topics": [
        "W"
      ]
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      "page": "W1",
      "title": "Variance matrix for beta1hat",
      "topics": [
        "W1"
      ]
    },
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      "page": "W2",
      "title": "variance matrix for beta2",
      "topics": [
        "W2"
      ]
    }
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